A comprehensive analysis of isomirs and their targets using high-throughput sequencing data for Arabidopsis thaliana

A comprehensive analysis of isomirs and their targets using high-throughput sequencing data for Arabidopsis thaliana

May 26, 2012

Firoz Ahmed, Patrick Xuechun ZhaoBioinformatics Laboratory, Plant Biology Division, Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401, USA. ABSTRACT The roles of microRNAs (miRNAs) in gene regulation have been well recognized. Recent establishment of large-scale high-throughput small RNA sequencing projects, such as the…

Computational analysis of cotton mirnas targeting genome of Cotton leaf curl Multan Virus and associated satellite DNA

Computational analysis of cotton mirnas targeting genome of Cotton leaf curl Multan Virus and associated satellite DNA

May 26, 2012

M Sarwar Baig, Shweta, Jawaid A KhanPlant Virology Lab, Department of Biosciences, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi-110025, India. ABSTRACT Cotton leaf curl Multan virus (CLCuMV), genus Begomovirus, family Gemnivirdae is the most devastating virus attributed to huge losses…

Amino acid sequence analysis of thermostable endo-ß-1, 4-glucanase purified from Trichoderma viride

Amino acid sequence analysis of thermostable endo-ß-1, 4-glucanase purified from Trichoderma viride

May 26, 2012

Nidhee ChaudharyAmity Institute of Biotechnology, Amity University, Sector-125, Noida-201303, Uttar Pradesh, India. ABSTRACT In the present investigation amino acid sequence analysis of thermostable endo-ß-1, 4-glucanase purified from Trichoderma viride is being reported. The purified enzyme was found to be thermostable up to…

Computational analysis of regulatory elements

Computational analysis of regulatory elements

May 26, 2012

Shivesh GhuraJaypee Institute of Information Technology University, Sector 62 Noida, Uttar Pradesh 201307, India. ABSTRACT With the advent of highthroughput technology, the compilation of multiple metazoan genome sequences and large scale expression data available on various databases, these genome sequences are yet…

Computational prediction and identification of new splice variant of PKA catalytic alpha subunit gene in mouse

Computational prediction and identification of new splice variant of PKA catalytic alpha subunit gene in mouse

May 26, 2012

Mohammad Aamir Hussain, Abdul Rouf Banday, Mohammad TabishDepartment of Biochemistry, Faculty of Life Sciences, A.M. University, Aligarh, U.P. 202002, India. ABSTRACT Cyclic AMP-dependent protein kinase (PKA) is a holoenzyme that consists of two regulatory and two catalytic subunits each encoded by separate…

Identification of candidate motifs in stress responsive genes associated with heavy metal tolerance in plants

Identification of candidate motifs in stress responsive genes associated with heavy metal tolerance in plants

May 26, 2012

Nishtha Lukhmana, Mohit Jain, Sayan ChatterjeeUniversity School of Biotechnology, Guru Gobind Singh Indraprastha University, New Delhi, India. ABSTRACT Heavy metals such as Cu, Fe and Zn are essential for normal plant growth, although elevated concentration of both essential (Cu, Fe, Mn, Mo,…

Identification and analysis of transcription factors and their binding sites in cervical cancer associated genes

Identification and analysis of transcription factors and their binding sites in cervical cancer associated genes

May 26, 2012

Manu Mangal1, Dhwani Raghav2, Vinay Sharma3, Subhash Mohan Agarwal11Bioinformatics Division, Institute of Cytology and Preventive Oncology (icmr), I-7, sector-39, Noida-201301, India.2Bioinformatics Division, Institute of Cytology and Preventive Oncology (icmr), I-7, sector-39, Noida-201301; Department of Bioscience and Biotechnology, Banasthali University, Rajasthan 304022, India.3Department…

Analysis of annotation strategies for hypothetical proteins: A case study of Neisseria

Analysis of annotation strategies for hypothetical proteins: A case study of Neisseria

May 26, 2012

Neeraj Nagpal, Neera Munjal, Sayan ChatterjeeUniversity School of Biotechnology, Guru Gobind Singh Indraprastha University, New Delhi, India. ABSTRACT Growing possibilities of biotechnology for genome sequencing lead to generation of sequences for millions of genes. However, function of majority of these genes is…

Community and functional analysis of metagenome data from hot spring

Community and functional analysis of metagenome data from hot spring

May 26, 2012

Mansi B Parmar, Rajesh K PatelHemchandracharya North Gujrat University, Patan, India. ABSTRACT Metagenomics is the culture-independent genomics analysis of microbial communities. “Metagenomics” describes the functional and sequence-based analysis of the collective microbial genomes contained in an environmental sample. With development of the…